They break the deferred maintenances out away from the rest of it in a slide toward the end of
NYSERDA's deep retrofit contractor training slides, (worth looking at, for some of the construction details.) See p.143 of 144.
In most of the units retrofitted the "Above Grade Wall (AGW), windows, windows, doors" line is on the order of half the total cost, and I'd expect half of that at least half of that line would be just in super-performance windows. (A quickie analysis of what a pretty-good but lesser windows with photovoltaics + mini-split heat-pumps against the condensing gas combi + super-windows might have been worth a back-of-napkin analysis were all things equal, which they're not. Cost for the mechanicals would have been comparable, but the offset in energy cost from PV paid for by the price differences of the window may have made enough of a difference in some cases, but probably not in all.)
On a cost per occupant basis the multi-family unit (DRP 3-4) looks atrociously expensive ($144K) until you subtract out the deferred maintenance, and end up with $59K/unit (~$119K total) for the efficiency upgrade aspects for 7 total occupants. Except for the 2-person single-family house the efficiency aspects of the rehabs comes in at about or under $20K/occupant.
The total cost & breakdown is comparable to a full-gut rehab + deep energy retrofit (DER) on a 3-family I've been advising on locally. Without state & federal subsidy just making code-min R would have been more expensive than what the fully subsided DER is turning out to be, so it didn't take much convincing to push the owner/developer in that direction once I made him aware of the available subsidy. (The "before" picture was quite the wreck-in-progress, but gladly it wasn't blown down by the last hurricane.) By the time he's $200-250K into it (including the purchase price of the property) it going to be pretty damned nice for a rental compared to most local stock, and capable of housing 8-10 people comfortably, with VERY low (tenant-paid) utility costs.