Well that first link looks like an overview or evaluation for suggested improvements. It summarizes with basically what I said above. There needs to be a common reference/standard...
The second link appears to be a little more detailed as to how the information is derived and represented on the label. It would be good to know when these two documents were created as some of the info in one or the other may be out of date which could explain the differences you are seeing.
The letter score reference back to energy transfer though, but of course different countries evaluated that information differently so the labels may not be all that valuable to you as some do and do not include solar gain. Many are taylored to specific climate zones found in that particular country. ANd some appear to rate in annual average energy consumption/savings.
Where are you located at? Are you in europe or just looking at european windows? At least on this side of the pond we have the NFRC rating system that many manufacturers are participating in. But if you have looked at NFRC data you will note it is all rated in U factor, solar heat gain, and air infiltration so yu can compare apples to apples. They are also very specific in how the windows are tested so the different windows can be compared to others more accurately so it is a little easier. There may even be some EU windows in the NFRC system as they want to be in that system to more easilly sell to the US market.
At any rate, windows can be a tough decision, which is how I came to take a run at answering your question. Since it is such a large percentage of my build budgett, I spent a little bit of time learning about window energy transfer to help me understand the numbers I was being presented with to help me make a decision. It apears that the european system attempts to take some of that education requirement out of an informed window decision(they dummed it down for the general public). but unless you are in those climate zones specified, I don't know how usefull that info will be... There are also other factors to consider such as design, construction, frame material and even overall customer satisfaction(probably equally dependent on manufacturer and installer). A tough bet with a huge pricetag riding on it
U factor is really not all that difficult to understand. It also allows you to pretty easilly and accurately calculate your heat loss for YOUR environmental conditions when considered along with the rest of your envelope makeup. As an example: 70F inside 30F outside = 40F difference. 10 SQ/FT of window at a .19U is .19BTU per SQ/FT (.19X10 = 1.9BTU) per degreeF (1.9X40=76) per hour. So 76BTU/HR lost out of a 10SQ/FT window.
U factor is the inverse of the common insulation R value. IE: a lower U factor = a higher R value. To invert a number you divide it into one. 1 divided by .19 = an R value of 5.2 for the .19 overall U factor window assembly I just used as an example.
The same can be done with the wall for heat loss calculations since R is the inverse of U. Say your wall is R30. 1 divided by 30 = a U factor for the wall of .033 BTU heat loss thru the wall and is applied the same way to say 100SQ/FT of wall and same temps as above .033 BTU per SQ/FT(.033X100=3.3 BTU) per degreeF(3.3X40=132)per hour so 132 BTU lost thru 100Sq/FT of wall over that same hour when it is 30F outside.
Solar heat gain coefficien(SHGC) is a little more complex as it relates to the ammount of sun you get actually shining thru that window, but it works in a similar fashion once you know the ammount of sun comming thru the ammount of windows that have sun exposure. You may want more or less of this depending on where you are located and your heating or cooling needs, and the glass package coatings can be taylored to allow more or less of this. Window location and eave overhang can be taylored to help control this energy transfer also.
Air infiltration is air infiltration, less is usually better.