Im not to familiar with the process of acid staining, but on our hambro jobs all of our flat work was sealed. We layed out scrap sheets of osb and cardboard down along the interior perimeter of the walls before we poured. Even though there were a few spots that got a splash of concrete here and there I found that it wasn't very difficult at all to take a flat headed shovel or form scraper to remove the unwanted dried up patches.
Are you installing radiant heat in the hambro? We were concerned about bracing attachment to the floor because of the risk of puncturing a pex tube. We wound up using the top plate material to temperarily secure our bracing:
